Analysis Tools


R


R


R is a language and environment for statistical computing and graphics. We use the wide variety of statistical (linear and nonlinear modelling, classical statistical tests, time-series analysis, classification, clustering, …) and graphical techniques that R provides to custom analyze the data for different projects.

CoreFlow


CoreFlow


To organize and analyze data generated from high-throughput screening, we use the in-house developed CoreFlow pipepline.
CoreFlow provides us with a framework to manage data in real time. Data is uploaded into a relational database (MySQL), and custom scripts can be created in high-level languages such as R, Python, or Perl for processing, correcting and modeling this data. CoreFlow organizes these scripts into project-specific pipelines, tracks interdependencies between related tasks, and enables the generation of summary reports as well as publication-quality images.

SMART to KEGG mapper


SMART_KEGG_mapper


SMART to KEGG mapper is an in-house developed web-based tool that shows what library components can be mapped to KEGG pathways.